XSEDE Documentation

Periodically, we will receive requests from our users for assistance, which range from general information (e.g. how do I log into XSEDE?) to detailed instructions and scripts (e.g. how do I install LAMMPS?). This page lists all of the current documents we have compiled over time as requests are processed.

Getting Started

  • Using XSEDE on Windows: Cygwin and the Globus Toolkit
    • gt5.2.4.patch - Globus Toolkit 5.2.4 patch to enable compilation using Cygwin
    • installGlobus-5.2.4-Cygwin - script to automatically download, compile, and install the Globus Toolkit 5.2.4 on Cygwin
    • setupXSEDE - script to set up environment for SSO on XSEDE

Program Installation

  • Firefly/PC-GAMESS with MPICH2 Installation Instructions - NICS Kraken
    • fireflyMPICH2-Kraken.job - sample PBS job script for Firefly on NICS Kraken
  • Rmpi Installation Instructions - SDSC Trestles
    • installRmpi_Trestles - installs Rmpi on SDSC Trestles
    • HelloRmpi.R - simple R file for testing Rmpi
    • HelloRmpi_Trestles.pbs - simple PBS job file for testing Rmpi on SDSC Trestles

Visualization

  • Connecting to a TACC Longhorn ParaView Server from a Desktop Client - Manual Approach
    • pvserverManualStart.job - SGE batch script to start pvserver manually on TACC Longhorn
  • Connecting to a TACC Longhorn ParaView Server from a Desktop Client - Automatic Approach
    • pvserverAutoStart.job - SGE batch script to start pvserver on TACC Longhorn automatically
    • pvclientConnect - local script for use in ParaView to remotely start pvserver on TACC Longhorn

Last Updated: 8/13/14